On 05/06/2011 07:44 AM, Emilio Xavier Esposito wrote:
> Hi Thank you!  The yum command fixed the problem.  I also edited the
> /etc/yum.repos.d/sl-updates.repo file as suggested but the
> /etc/yum.repos.d/sl-fastbugs.repo file was not present.

The sl-fastbugs repo section is in the /etc/yum.repos.d/sl-updates.repo 
file.  There is no /etc/yum.repos.d/sl-fastbugs.repo file.

 > Should I
> perform the following to insure that everything is current?
>
> yum clean all
> yum update
> yum check all
>

It should help.

> I have also noticed that some packages (pdb2pka; part of the pdb2pqr
> package http://www.poissonboltzmann.org/pdb2pqr/ ) cannot find
> portions of numpy (also installed) during compiling.
>

I'll have to let someone else answer this one. I am not a numpy expert.

> As this workstation is relatively fresh, I am open to doing a fresh
> install and trying various solutions.
>
> Emilio
>
> On Fri, May 6, 2011 at 3:47 AM, Troy Dawson<[log in to unmask]>  wrote:
>> Hi, We are seeing this problem more and more. The problem stems
>> from when you did the install, you probrubly picked the sl-fastbugs
>> repo during the install. This means that you got all the security
>> and fastbug updates during the install, which is good, in a way.
>> The real problem is that sl-fastbugs isn't turned on by default.
>> So you have all these packages that were updated during the
>> install, but now when yum looks at the enabled repositories, it
>> only see's packages that are older than you have installed.
>>
>> Short term solution yum --enablerepo=sl-fastbugs install
>> libSM.i686
>>
>> Longer term solution Edit /etc/yum.repos.d/sl-updates.repo and edit
>> sl-fastbugs and change "enable=0" to "enable=1"
>>
>> Longer term solution This is a problem we need to address before SL
>> 6.1.  I have some ideas, but wouldn't mind suggestions.
>>
>> Troy
>>
>> On 05/05/2011 09:33 PM, Emilio Xavier Esposito wrote:
>>>
>>> Hi Thomas Thank you for the suggestion.  Attempting to install
>>> the libSM.i686 library via yum returns:
>>>
>>> Transaction Check Error: package libuuid-2.17.2-6.el6_0.1.x86_64
>>> (which is newer than libuuid-2.17.2-6.el6.i686) is already
>>> installed
>>>
>>> I think something might be really off regarding the workstation
>>> as it cannot find numpy even though it is installed (according to
>>> yum).
>>>
>>> Emilio
>>>
>>> On Thu, May 5, 2011 at 4:43 PM, tom P<[log in to unmask]>    wrote:
>>>>
>>>> Am 05.05.2011 20:58, schrieb Emilio Xavier Esposito:
>>>>>
>>>>> Hi I recently did a fresh install of SL6 x86_64 (formerly
>>>>> running SL5.3 x86_64) and realized that the 32 bit libraries
>>>>> were not installed. SL6 is up-to-date and I have installed
>>>>> the NVIDIA drivers from NVIDIA.
>>>>>
>>>>> One application returns the following when trying to run the
>>>>> gui version but the command line version works as expected.
>>>>> libSM.so.6: cannot open shared object file: No such file or
>>>>> directory
>>>>>
>>>>> I have looked in the "Add/Remove Software" application for
>>>>> the "32 bit libraries" package but could not find them.  I
>>>>> have also tried to install the 32 bit (i686) version of the
>>>>> libraries using rpm.  The rpm command and resulting error
>>>>> are:
>>>>>
>>>>> [root@SL6box ~]# rpm -i
>>>>>
>>>>>
>>>>> ftp://ftp.scientificlinux.org/linux/scientific/6x/x86_64/os/Packages/libSM-1.1.0-7.1.el6.i686.rpm
>>>>>
>>>>>
error: Failed dependencies:
>>>>> libuuid.so.1 is needed by libSM-1.1.0-7.1.el6.i686
>>>>> libuuid.so.1(UUID_1.0) is needed by libSM-1.1.0-7.1.el6.i686
>>>>> [root@SL6box ~]# rpm -i
>>>>>
>>>>>
>>>>> ftp://ftp.scientificlinux.org/linux/scientific/6x/x86_64/os/Packages/libuuid-2.17.2-6.el6.i686.rpm
>>>>>
>>>>>
package libuuid-2.17.2-6.el6_0.1.x86_64 (which is newer than
>>>>> libuuid-2.17.2-6.el6.i686) is already installed
>>>>>
>>>>> I have also tried to include the i686 repo under yum but have
>>>>> received the same results.
>>>>>
>>>>> Is there another way of installing the 32 bit libraries?  As
>>>>> the missing libraries are most likely graphics related, is
>>>>> there a subset of libraries I should install?  Or should I
>>>>> install SL 5.5 or Fedora?
>>>>>
>>>>> Thank you Emilio
>>>>
>>>> Have you tried installing the package directly via yum: 'yum
>>>> install libSM.i686'. Worked here on a 64bit SL6 system without
>>>> fiddling with the repos. We rely heavily on 32bit libs and I
>>>> usually don't need to grab them manually.
>>>>
>>>> Best regards, Thomas
>>>>
>>
>>
>> -- __________________________________________________ Troy Dawson
>> [log in to unmask]  (630)840-6468 Fermilab
>> ComputingDivision/SCF/FEF/SLSMS Group
>> __________________________________________________
>>


-- 
__________________________________________________
Troy Dawson  [log in to unmask]  (630)840-6468
Fermilab  ComputingDivision/SCF/FEF/SLSMS Group
__________________________________________________