On 05/06/2011 07:44 AM, Emilio Xavier Esposito wrote: > Hi Thank you! The yum command fixed the problem. I also edited the > /etc/yum.repos.d/sl-updates.repo file as suggested but the > /etc/yum.repos.d/sl-fastbugs.repo file was not present. The sl-fastbugs repo section is in the /etc/yum.repos.d/sl-updates.repo file. There is no /etc/yum.repos.d/sl-fastbugs.repo file. > Should I > perform the following to insure that everything is current? > > yum clean all > yum update > yum check all > It should help. > I have also noticed that some packages (pdb2pka; part of the pdb2pqr > package http://www.poissonboltzmann.org/pdb2pqr/ ) cannot find > portions of numpy (also installed) during compiling. > I'll have to let someone else answer this one. I am not a numpy expert. > As this workstation is relatively fresh, I am open to doing a fresh > install and trying various solutions. > > Emilio > > On Fri, May 6, 2011 at 3:47 AM, Troy Dawson<[log in to unmask]> wrote: >> Hi, We are seeing this problem more and more. The problem stems >> from when you did the install, you probrubly picked the sl-fastbugs >> repo during the install. This means that you got all the security >> and fastbug updates during the install, which is good, in a way. >> The real problem is that sl-fastbugs isn't turned on by default. >> So you have all these packages that were updated during the >> install, but now when yum looks at the enabled repositories, it >> only see's packages that are older than you have installed. >> >> Short term solution yum --enablerepo=sl-fastbugs install >> libSM.i686 >> >> Longer term solution Edit /etc/yum.repos.d/sl-updates.repo and edit >> sl-fastbugs and change "enable=0" to "enable=1" >> >> Longer term solution This is a problem we need to address before SL >> 6.1. I have some ideas, but wouldn't mind suggestions. >> >> Troy >> >> On 05/05/2011 09:33 PM, Emilio Xavier Esposito wrote: >>> >>> Hi Thomas Thank you for the suggestion. Attempting to install >>> the libSM.i686 library via yum returns: >>> >>> Transaction Check Error: package libuuid-2.17.2-6.el6_0.1.x86_64 >>> (which is newer than libuuid-2.17.2-6.el6.i686) is already >>> installed >>> >>> I think something might be really off regarding the workstation >>> as it cannot find numpy even though it is installed (according to >>> yum). >>> >>> Emilio >>> >>> On Thu, May 5, 2011 at 4:43 PM, tom P<[log in to unmask]> wrote: >>>> >>>> Am 05.05.2011 20:58, schrieb Emilio Xavier Esposito: >>>>> >>>>> Hi I recently did a fresh install of SL6 x86_64 (formerly >>>>> running SL5.3 x86_64) and realized that the 32 bit libraries >>>>> were not installed. SL6 is up-to-date and I have installed >>>>> the NVIDIA drivers from NVIDIA. >>>>> >>>>> One application returns the following when trying to run the >>>>> gui version but the command line version works as expected. >>>>> libSM.so.6: cannot open shared object file: No such file or >>>>> directory >>>>> >>>>> I have looked in the "Add/Remove Software" application for >>>>> the "32 bit libraries" package but could not find them. I >>>>> have also tried to install the 32 bit (i686) version of the >>>>> libraries using rpm. The rpm command and resulting error >>>>> are: >>>>> >>>>> [root@SL6box ~]# rpm -i >>>>> >>>>> >>>>> ftp://ftp.scientificlinux.org/linux/scientific/6x/x86_64/os/Packages/libSM-1.1.0-7.1.el6.i686.rpm >>>>> >>>>> error: Failed dependencies: >>>>> libuuid.so.1 is needed by libSM-1.1.0-7.1.el6.i686 >>>>> libuuid.so.1(UUID_1.0) is needed by libSM-1.1.0-7.1.el6.i686 >>>>> [root@SL6box ~]# rpm -i >>>>> >>>>> >>>>> ftp://ftp.scientificlinux.org/linux/scientific/6x/x86_64/os/Packages/libuuid-2.17.2-6.el6.i686.rpm >>>>> >>>>> package libuuid-2.17.2-6.el6_0.1.x86_64 (which is newer than >>>>> libuuid-2.17.2-6.el6.i686) is already installed >>>>> >>>>> I have also tried to include the i686 repo under yum but have >>>>> received the same results. >>>>> >>>>> Is there another way of installing the 32 bit libraries? As >>>>> the missing libraries are most likely graphics related, is >>>>> there a subset of libraries I should install? Or should I >>>>> install SL 5.5 or Fedora? >>>>> >>>>> Thank you Emilio >>>> >>>> Have you tried installing the package directly via yum: 'yum >>>> install libSM.i686'. Worked here on a 64bit SL6 system without >>>> fiddling with the repos. We rely heavily on 32bit libs and I >>>> usually don't need to grab them manually. >>>> >>>> Best regards, Thomas >>>> >> >> >> -- __________________________________________________ Troy Dawson >> [log in to unmask] (630)840-6468 Fermilab >> ComputingDivision/SCF/FEF/SLSMS Group >> __________________________________________________ >> -- __________________________________________________ Troy Dawson [log in to unmask] (630)840-6468 Fermilab ComputingDivision/SCF/FEF/SLSMS Group __________________________________________________