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August 2013

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Subject:
From:
Pat Riehecky <[log in to unmask]>
Reply To:
Pat Riehecky <[log in to unmask]>
Date:
Fri, 30 Aug 2013 12:23:44 -0500
Content-Type:
text/plain
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On 08/30/2013 12:15 PM, Emyr James wrote:
> Hi,
>
> I just did a new install of SL6.4. Yum update is failing with the following...
>
> # yum update
> Loaded plugins: security
> sl | 3.7 kB     00:00
> sl-security | 3.0 kB     00:00
> sl-security/primary_db | 3.3 MB     00:00
> http://ftp.scientificlinux.org/linux/scientific/6.4/x86_64/updates/security/repodata/primary.sqlite.bz2: 
> [Errno -1] Metadata file does not match checksum
> Trying other mirror.
> sl-security/primary_db | 3.8 MB     00:00
> http://ftp1.scientificlinux.org/linux/scientific/6.4/x86_64/updates/security/repodata/primary.sqlite.bz2: 
> [Errno -1] Metadata file does not match checksum
>
> etc.
>
> I did the usual trick of yum clean metadata / yum clean all and it made no 
> difference.
>
> I uncommented the mirrorlist in /etc/yum.repos.d/sl.repo and tried again. It 
> goes through all of them....here are some highlights...
>
> Trying other mirror.
> http://mirror.aarnet.edu.au/pub/scientific/6.4/x86_64/updates/security/repodata/primary.sqlite.bz2: 
> [Errno 14] PYCURL ERROR 22 - "The requested URL returned error: 416 Unknown"
> Trying other mirror.
> ftp://mirror.aarnet.edu.au/pub/scientific/6.4/x86_64/updates/security/repodata/primary.sqlite.bz2: 
> [Errno 14] PYCURL ERROR 36 - "Offset (8016072) was beyond file size (4008036)"
> Trying other mirror.
> http://ftp.halifax.rwth-aachen.de/scientificlinux/6.4/x86_64/updates/security/repodata/primary.sqlite.bz2: 
> [Errno 14] PYCURL ERROR 22 - "The requested URL returned error: 416 Unknown"
> Trying other mirror.
> ftp://ftp.halifax.rwth-aachen.de/scientificlinux/6.4/x86_64/updates/security/repodata/primary.sqlite.bz2: 
> [Errno 14] PYCURL ERROR 36 - "Offset (8016072) was beyond file size (4008036)"
> Trying other mirror.
> http://gd.tuwien.ac.at/opsys/linux/scientific/6.4/x86_64/updates/security/repodata/primary.sqlite.bz2: 
> [Errno 14] PYCURL ERROR 22 - "The requested URL returned error: 416 Unknown"
> Trying other mirror.
> ftp://gd.tuwien.ac.at/opsys/linux/scientific/6.4/x86_64/updates/security/repodata/primary.sqlite.bz2: 
> [Errno 14] PYCURL ERROR 36 - "Offset (8016072) was beyond file size (4008036)"
> Trying other mirror.
> http://mirror.cpsc.ucalgary.ca/mirror/scientificlinux.org/6.4/x86_64/updates/security/repodata/primary.sqlite.bz2: 
> [Errno 14] PYCURL ERROR 22 - "The requested URL returned error: 416 Unknown"
> Trying other mirror.
> ftp://mirror.cpsc.ucalgary.ca/mirror/scientificlinux.org/6.4/x86_64/updates/security/repodata/primary.sqlite.bz2: 
> [Errno 14] PYCURL ERROR 36 - "Offset (8016072) was beyond file size (4008036)"
>
> It went through the whole list and failed on them all.
>
> The only way to get yum to work is to disable the sl-security repo. I take 
> it there is a problem with primary.sqlite.bz2 for this repo ?
>
> If not...how can I fix this problem ?
>
> Cheers,
>
> Emyr

Hello Emyr,

That is very surprising!

I just ran 'yum clean all; yum makecache' on my SL 6.4 x86_64 box with no issues:

Loaded plugins: fastestmirror, protectbase, refresh-packagekit, security
Determining fastest mirrors
  * sl6x: ftp2.scientificlinux.org
  * sl6x-fastbugs: ftp2.scientificlinux.org
  * sl6x-security: ftp2.scientificlinux.org
sl6                                                      | 3.7 kB     00:00
sl6/group_gz                                             | 212 kB     00:00
sl6/filelists_db                                         | 5.1 MB     00:00
sl6/primary_db                                           | 4.2 MB     00:00
sl6/other_db                                             | 1.9 MB     00:00
sl6-fastbugs                                             | 3.0 kB     00:00
sl6-fastbugs/filelists_db                                | 535 kB     00:00
sl6-fastbugs/primary_db                                  | 450 kB     00:00
sl6-fastbugs/other_db                                    | 649 kB     00:00
sl6-security                                             | 3.0 kB     00:00
sl6-security/filelists_db                                | 2.8 MB     00:00
sl6-security/primary_db                                  | 3.8 MB     00:00
sl6-security/other_db                                    | 420 kB     00:00
sl6x                                                     | 3.7 kB     00:00
sl6x/group_gz                                            | 212 kB     00:00
sl6x/filelists_db                                        | 5.1 MB     00:00
sl6x/primary_db                                          | 4.2 MB     00:00
sl6x/other_db                                            | 1.9 MB     00:00
sl6x-fastbugs                                            | 3.0 kB     00:00
sl6x-fastbugs/filelists_db                               | 535 kB     00:00
sl6x-fastbugs/primary_db                                 | 450 kB     00:00
sl6x-fastbugs/other_db                                   | 649 kB     00:00
sl6x-security                                            | 3.0 kB     00:00
sl6x-security/filelists_db                               | 2.8 MB     00:00
sl6x-security/primary_db                                 | 3.8 MB     00:00
sl6x-security/other_db                                   | 420 kB     00:00
Metadata Cache Created

Do you have a proxy server between you and the internet?  How about 
/var/cache/yum/ is there a bunch of space there?

Pat


-- 
Pat Riehecky

Scientific Linux developer
http://www.scientificlinux.org/

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